Scientific Program

Conference Series Ltd invites all the participants across the globe to attend 11th International Conference on Genomics and Pharmacogenomics Philadelphia, Pennsylvania, USA.

Day 2 :

Keynote Forum

Hector Barajas-Martinez

Corporacion Genetica Global (Global Genetics Corporation), USA/MEXICO

Keynote: Gender effect on the genotype-phenotype correlation in congenital long QT syndrome

Time : 09:00-09:30

Conference Series Genome 2018 International Conference Keynote Speaker Hector Barajas-Martinez  photo
Biography:

Hector, Barajas-Martinez (PhD in Human Genetics and Fellow of Heart Rhythm Society) is currently the CEO of Global Genetics Corporation and Scientific Chief Officer (SCO) of CAMDIA MEDICAL LLC in Ventura, California. He is a new Special Section Editor of Electrocardiology and Genetics/Inherited Arrhythmia Disorders below to peer review Journal of Electrocardiology. He was a Clinical Director of Molecular Genetics/Research Scientist at Molecular Genetics & Experimental Cardiology, Masonic Medical Research Laboratory in Utica, New York USA. Over the last 20 years or more he has been fully committed to advancing translational research in the field of genetics in cardiac arrhythmias. His new role in the Molecular Genetics and Functional Genomics Programs is to establish new strategies for molecular genetic approaches to identified new genetic markers in Inherited Cardiac Death Syndromes, Neuronal and Cancer diseases. He played a key role in the discovery and characterization of more than 8 new genes related to Brugada, Early Repolarization, Short and Long QT Syndromes and Hypertrophic and Dilated Cardiomyopathies, which were published in top tier scientific journals. We are interested in helping to identify novel gene or multiple genes mutations linked to inherited cardiac, diabetes, obesity, cancer and neuropathology syndromes associated with ion channels and structural gene-diseases. 

Abstract:

In long QT syndrome (LQTS), female shows a higher risk of a cardiac event compared with a male in previous studies. However, the real nature about the difference between male and female is still lacking. In this investigation, we sought to comprehensively compare the genotype-phenotype correlation between sexes in genotyped LQTS patients. We enrolled 603 congenital LQTS cases from 6 registered centers (65.8% females; 72.9% probands; average ages at diagnosis, 21.8±17.8 y/o). Participants provided written informed consent, and clinical characteristics were recorded. All patients underwent at least LQT1-3 gene screening. Seventeen reported LQTS and other inherited arrhythmia candidate genes were sequenced with next-generation sequencing (NGS) in 306 (51%) cases. Major cardiac events (MCE) were defined as (aborted) sudden cardiac death, and/or documented malignant arrhythmias. Cardiac symptom includes syncope and MCE. Multiple factors determined the QTc and repolarization reserve could affect the clinical manifestation and eventually predispose cardiac events in LQTS patients. The gender difference in QTc is probably caused by sex hormone, especially higher level of testosterone after puberty. During the menstrual cycle, pregnancy, postpartum period, or menopause, QTc and risk of cardiac events significantly fluctuate in females. Nevertheless, the effect of gender and its underlying genetic dominators on QTc and clinical consequences is still undetermined, and the type of genetic mutation may help to further distinguish the high-risk LQTS subgroups, especially in the female. Although our result is deduced from patients collected by multiple international centers, and it includes the largest Chinese and Mexican LQTS cohort by far, it may not be generalizable to LQTS of all ethnicities, because we have restricted access to Black or African. In conclusion, the present study systematically reports the gender differences of genotype-phenotype correlation in LQTS patients, which provides further guidance on risk stratification and precision intervention. Further studies are warranted to decipher the unique gender code and to improve outcomes of LQTS patients. 

Conference Series Genome 2018 International Conference Keynote Speaker David I Smith  photo
Biography:

David I Smith is an expert on DNA sequencing and is the Chairman of the Technology Assessment Group for the Mayo Clinic Center for Individualized Medicine. His research focuses on the role that the common fragile sites play in cancer development. His group also studies the different ways that human papillomavirus plays in the development of different cancers. They have been using several whole genome sequencing strategies to study these two important questions.

Abstract:

High-risk variants of human papillomavirus (HPV) are the major causative factor in the development of cervical cancer. These viruses are also responsible for a number of other anogenital cancers and are increasingly involved in the development of a completely different cancer oropharyngeal squamous cell carcinoma (OPSCC). Unlike cervical cancer, however, OPSCC has other risk factors most notably smoking or other carcinogenic exposures. In an attempt to study how HPV might be involved in the development of OPSCC we have been using two different whole genome sequencing strategies to study the molecular alterations that occur during the development of HPV-positive OPSCCs. The first is mate-pair next-generation sequencing (MP-Seq) on the Illumina sequencing platform. The second is 30X whole genome sequencing on the BGI (Complete Genomics) sequencing platform. Using MP-Seq we have found that HPV integration into the human genome only occurs in 30% of HPVpositive OPSCCs, which is quite distinct from what is observed in cervical cancer. We have also found that there are instances where HPV has integrated into the human genome, but that there remains a high copy number of extrachromosomal HPV sequences present, something that is also not usually found in cervical cancer. Using 30X whole genome sequencing we have been attempting to characterize the structure at and around individual HPV integrations. We have also used this sequencing to study other alterations that occur throughout the genome of these OPSCCs. Our work reveals that HPV may be playing different roles in the development of different OPSCCs. This is an excellent model to study the earliest events in the development of cancer and how HPV facilitates carcinogenesis. 

Keynote Forum

John Powers

Murrieta Genomics, USA

Keynote: Genomics the cellular evolution of Medicine

Time : 10:00-10:30

Conference Series Genome 2018 International Conference Keynote Speaker John Powers  photo
Biography:

John Powers has spent his entire professional career in high tech, first in the wireless industry and for the past 10 years, John has worked in the medical industry specifically focused on halting cancer. As CEO of IntraOp Medical, John worked with multidisciplinary teams including physicists, surgeons, radiation and medical oncologists in the top cancer centers around the world. Working with the Centers for Medicare & Medicaid Services (CMS) John was able to secure a new reimbursement code and reimbursement for Intra-Operative Radiation Therapy (IORT).  John’s work with IntraOp led him to an interest in gene-based technologies available to foil cancer before a tumor can grow or metastasize. John has spent the past 3 years working with cancer and surgical centers promoting and expanding genetic and genomic testing. He is committed to the expansion and incorporation of gene sequencing in conventional medicine. 

Abstract:

Statement of the problem: The current trajectory of health care costs is unsustainable without major changes. The lack of uniformity, true competition and focus on reimbursement as opposed to cost has greatly contributed to the out of control cost in current health systems. In addition, the number of doctors and medical professionals cannot keep pace with the growing demand. There are a number of other areas contributing as well, and the trajectory has to change. Healthcare “digitization” has been happening at all levels of the healthcare continuum and will provide the tools and understanding to move the medical industry to the health industry and allow the patient to take a more active part in determining their correct path. Enabling technology: Next Generation Technology (NGS) is an incredible enabling technology. It has the potential to impact medical the same was Code Division Multiple Access (CDMA) impacted the cellular market. Leading to unlimited calling plans and an explosion of data applications. NGS will help drive new cost milestones due to the volume and quality of information that can be derived from a single NGS test. DNA, RNA, Microbiome, epigenetics, and other comics. NGS driven testing is already having positive impacts on diagnosis, pain management, nutrition, imaging, treatment planning, radiation therapy, chemotherapy, surgery, and surveillance. This is not a comprehensive list but provides an idea of the vast amount of data NGS can produce. Conclusion: Just like in the cellular communications market, the applications, software, and applications will evolve over the next decade to fully utilize the power of NGS. The medical market is looking at neural networks, deep learning, and artificial evolution programming. These two industries are going to continue to converge as part of medical evolution. 

Conference Series Genome 2018 International Conference Keynote Speaker Genhua Pan  photo
Biography:

Genhua Pan is a Professor and Head of Wolfson Nanomaterials & Devices Laboratory at the University of Plymouth, UK and Coordinator of EU H2020 Marie Curie network BBDiag. He has over 30 years of research and teaching experience in micro/nanoscale thin films and devices, information storage technology and electronic engineering. His current research interest encompasses graphene & 2D materials/devices, biosensors, renewable energy/solar cells, spintronics and magnetic data storage. Genhua graduated from Zhejiang University, China in 1981, worked in the Chinese Academy of Science until 1988 when he obtained a scholarship to visit Loughborough University for a year. He then joined Plymouth University in 1989, gained my PhD in materials and physics in 1993. Over the years, He has also worked with a number of institutions as a visiting researcher (Sony Research Centre, Yokohama, Japan, Akita Institute of Technology, Akita, Japan, and Seagate Technology, Northern Island). To date, he has published over 100 journal and conference papers, 3 book chapters and 6 patents. 

Abstract:

Statement of the Problem: Alzheimer’s disease is the most common form of dementia leading to a massive irreversible neuronal loss and cognitive decline. It affects over 7 million people in Europe and 5.5 million in America and this figure is expected to double every 20 years as the population ages. Early detection of the AD is the key requirement for developing disease-modifying treatments as studies show that pathology exceeds symptom by years. The existing techniques for detection using CSF and Imaging biomarkers are highly expensive and invasive. Blood-based biomarkers, however, can provide a simple and effective way for the screening of AD patients. The talk covers the latest progress in the EU H2020 BBDiag research project, for the development of blood biomarker-based diagnostics for early-stage AD employing by multiplexed graphene biosensor arrays. Methodology & Theoretical Orientation: Two novel graphene biosensors were developed for label-free detection of DNA and protein biomarkers, a graphene immunoFET for detection of protein markers and a rGO-graphene electrode for detection of DNA markers. Findings: The rGO electrode shows enhanced redox current up to 40% higher in comparison with electrodes of bare graphene due to the combination of a high number of electroactive sites on rGO and high conductivity of pristine graphene. A linear range from 10-7M to 10-12M is demonstrated for the biosensor with a detection limit of 1.58 x 10-13M. The immunoFET showed a unique resistance change pattern with high reproducibility and an ultralow detection limit of 1pg mL-1 and high sensitivity of 0.30 Ω/ng/mL. Conclusion & Significance: We have demonstrated that graphene biosensors can be employed for ultra-sensitive and label-free detection of DNA and proteomic disease biomarkers. The work may lead to the development of cost-effective and minimally invasive point of care diagnostic devices for routine screening of Alzheimer’s disease with a panel of biomarkers. Biography 

Keynote Forum

Ron L Martin

Nutrigenetics Unlimited Inc., USA

Keynote: Genetics/Genomics for both treatment and prevention: The evidence-base

Time : 11:20-11:50

Conference Series Genome 2018 International Conference Keynote Speaker Ron L Martin  photo
Biography:

Ron Martin received his BS and MS degrees in Food Science and Nutrition from Chapman University, in Orange, California. He worked for more than 35 years in the nutraceutical and food industries, including Hunt-Wesson/ConAgra, Plus Products, the William. T. Thompson Co., and the Nutrilite division of Alticor, where he served as Senior Research Scientist in Nutrilite's New Concepts group.  Ron has been a Professional member of the Institute of Food Technologists (IFT) and is President of Nutrigenetics Unlimited, Inc., which he founded in 2007 (www.Nutrigenetics.net). He is also one of the founding members of the International Society of Nutrigenetics/Nutrigenomics (ISNN, www.NutritionAndGenetics.org). 

Abstract:

The emerging genetics/genomics evidence-base for both treatments and prevention will be described, along with online tools for increasing both awareness and utility of the increasingly actionable information. This can be helpful to the entire spectrum of potential users, including students and other members of the public. Such tools are increasingly important as the body of literature continues to expand rapidly, making it progressively more difficult to identify and manage the evidence-base for making genetics-informed choices. Online resources will be described, including the use of standardized terminology which allows the creation of subtopic listings for any given topic, or for any given combination of topics – including for genes and gene variants. Beyond diagnosis and treatment alone, such approaches also allow identification and exploration of prevention opportunities (both embracement and avoidance). Such information can be useful for pursuing both physical and mental health. Gene-environment examples include nutrition, pharmaceuticals, pollution, lifestyle, social environment, etc. Because nutrition applies to everyone without exception, it can become a useful introductory "archetype" for promoting greater engagement, and greater genetics/health literacy. 

Keynote Forum

Dr. David I Smith

Department of Laboratory Medicine and Pathology,Mayo Clinic,USA

Keynote: Whole Genome Sequencing Strategies to Characterize Human Papillomaviruses Role in the Development of Cancer
Conference Series Genome 2018 International Conference Keynote Speaker Dr. David I Smith photo
Biography:

David I Smith is the Chairman of the Technology Assessment Group for the Mayo Clinic Center for Individualized Medicine. He is an expert of advanced DNA sequencing methodologies and how to use these to study the molecular alterations that occur during cancer development. His research focuses on the different roles that human papillomavirus plays in the development of different cancers. His group also studies genome instability during cancer development and the role that the common fragile sites plays in this.

Abstract:

Human papillomavirus (HPV) is involved in the development of a number of anogenital cancers and is increasingly involved in the development of oropharyngeal squamous cell carcinoma (OPSCC), a cancer of the base of the tongue and the thyroid. Much of what is currently known about HPVs role in cancer development comes from studies of cervical cancer. Women whole immune system does not clear the HPV virus are at an increased risk of developing cervical cancer. Infection of the cervical epithelium with HPV causes cellular immortalization but additional alterations are required for invasive cancer to develop. One such alteration in integration of the HPV virus into the human genome which is observed in most, but not all, cervical cancers. We have been studying HPVs role in the development of OPSCC using several whole genome sequencing strategies. The first is mate pair next generation sequencing on the Illumina sequencing platform. The second is whole genome sequencing (WGS) on the BGI sequencing platform. These studies have revealed that HPVs role in the development of OPSCC is different that in cervical cancer as HPV is only integrated in about 30% of HPV-positive OPSCCs. Furthermore these studies have demonstrated that HPV plays different roles in the development of different OPSCCs. WGS not only can determine where HPV has integrated into the human genome but also the structure of the chromosomal region after the integration event. WGS can also characterize many other genomic alterations that occur in these cancer genomes. I will describe our work characterizing how we’ve utilized genome sequencing to study HPVs role in the development of OPSCC.

 

Keynote Forum

Krishna Dronamraju

Foundation for Genetic Research, President of the Foundation for Genetic Research,USA

Keynote: Genomics and ELSI (ethical, legal, and social issues)
Conference Series Genome 2018 International Conference Keynote Speaker Krishna Dronamraju photo
Biography:

Dr. Krishna Dronamraju is President of the Foundation for Genetic Research in Houston and a Visiting Professor of the University of Paris. He is the author of 20 books in Genetics, Biotechnology and History of Science. He had been an Advisor to the U.S. Government in Genetics and Biotechnology in relation to Health and Agriculture. His research interests include the ethical and social impact of genetic applications, human gene therapy, and history of genetics. 

Abstract:

J.B.S. Haldane (1923) was the first to emphasize the ethical impact of Genomics. Gene-based diagnostics and therapeutics are being widely integrated into healthcare today. However, there are barriers to accessing these new technologies for the public worldwide. An important role for all nurses will be to make sure that the health and social needs of the public are being met, including addressing the technological inequities in accessing genomic health care worldwide. This requires a major shift in emphasis to a more global view of health and disease.

The basis for equal access to genomic health care around the world can be found in the World Health Organization’s Proposed Guidelines on Ethical Issues in Medical Genetics and Genetics Services. The core public health function of assurance includes making sure that the general public has access to and quality of genomic healthcare, and informing populations about relevant genomic health issues and services. The World Health Organization document emphasizes the importance of education about genetics for the public and all healthcare professionals noting the profound economic and technological inequities that exist between nations.

Governmental agencies can assist in promoting genetic and genomic healthcare around the world. In the United States, the Centers for Disease Control and Prevention (CDC) has taken a leading role in addressing issues of access to genetic and genomic resources by creating multiple tools and resources that address the role of genetics in public health. Health care workers can take a leading role working with state, federal, and international health agencies to provide guidance to health systems with regard to decisions about utilization of genetics and genomics services. The opportunities to fully participate in genomic healthcare throughout the healthcare continuum, for all populations, and at all stages in the lifespan are multiple. The challenge is to ensure that the workforce is prepared and competent to provide genetic and genomic care. Knowledge and understanding of current and emerging ethical issues is an essential component of this knowledge base. 

 

 

Keynote Forum

John Powers

Co-Founder at Murrieta Genomics,USA

Keynote: Genomics the Cellular Evolution of Medicine
Conference Series Genome 2018 International Conference Keynote Speaker John Powers photo
Biography:

John Powers has spent his entire professional career in high tech, first in the wireless industry and for the past 10 years, John has worked in the medical industry specifically focused on halting cancer. As CEO of IntraOp Medical, John worked with multidisciplinary teams including physicists, surgeons, radiation and medical oncologists in the top cancer centers around the world. Working with the Centers for Medicare & Medicaid Services (CMS) John was able to secure a new reimbursement code and reimbursement for Intra-Operative Radiation Therapy (IORT).  John’s work with IntraOp led him to an interest in gene-based technologies available to foil cancer, before a tumor can grow or metastasize. John has spent the past 3 years working with cancer and surgical centers promoting and expanding genetic and genomic testing. He is committed to the expansion and incorporation of gene sequencing in conventional medicine.

Abstract:

Statement of the problem: The current trajectory of healthcare costs is unsustainable without major changes. The lack of uniformity, true competition and focus on reimbursement as opposed to cost has greatly contributed to the out of control cost in current health systems. In addition, the number of doctors and medical professionals cannot keep pace with the growing demand. There are a number of other areas contributing as well, and the trajectory has to change. Healthcare “digitization” has been happening at all levels of the healthcare continuum and will provide the tools and understanding to move the medical industry to the health industry and allow the patient to take a more active part in determining their correct path.

Enabling technology: Next Generation Technology (NGS) is an incredible enabling technology. It has the potential to impact medical the same was Code Division Multiple Access (CDMA) impacted the cellular market. Leading to unlimited calling plans and an explosion of data applications. NGS will help drive new cost milestones due to the volume and quality of information that can be derived from a single NGS test. DNA, RNA, Microbiome, epigenetics, and other omics. NGS driven testing is already having positive impacts in diagnosis, pain management, nutrition, imaging, treatment planning, radiation therapy, chemotherapy, surgery, and surveillance. This is not a comprehensive list, but provides an idea of the vast amount of data NGS can produce.

Conclusion: Just like in the cellular communications market, the applications, software and applications will evolve over the next decade to fully utilize the power of NGS. The medical market is looking to neural networks, deep learning and artificial evolution programming. These two industries are going to continue to converge as part of medical evolution.

 

  • Human Genetics | Cancer Genetics | Genetic Disorders | Molecular and Cellular Genetics | Medical Genetics | Population and Evolutionary Genetics | Cytogenetics | Epigenetics | Immunogenetics | Pharmacogenomics | Microbial Genomics | Cancer Genomics | Functional Genomics | Nutrigenomics

Session Introduction

Khushnooda Ramzan

King Faisal Specialist Hospital and Research Centre, Saudi Arabia

Title: Challenges and rewards of Usher syndrome genetics research in Saudi Arabia

Time : 13:50-14:15

Speaker
Biography:

Khushnooda Ramzan, PhD in molecular biology works as Scientist in the Department of Genetics, King Faisal Specialist Hospital and Research Centre, Riyadh. She got her PhD from the Punjab University; during which she discovered new genes for hearing loss. After her PhD she joined the department of genetics at KFSHRC, and continued working mainly on the genetics of deafness in the Saudi population. Her research focus was to investigate the role of different genes in hearing loss within the Saudi families. So far, she has characterized and documented genetic basis of deafness in more than 500 families of Saudi Arabian origin; their incidence and distribution were also documented..
 

Abstract:

Hearing loss is one of the most common sensory disorders in humans with both genetic and environmental etiologies. Usher syndrome (USH) is the most common cause of combined deafness and blindness inherited in an autosomal recessive mode. Molecular diagnosis is of great significance in revealing the molecular pathogenesis and aiding the clinical diagnosis of this disease. However, the molecular diagnosis remains a challenge due to the phenotypic and genetic heterogeneity in USH. Our study aims to comprehensively delineate the genetic basis of this disorder in Saudi Arabia. Consanguineous families are a powerful resource for genetic linkage studies/homozygosity mapping for recessively inherited hearing impairment. Prioritized linkage analysis and homozygosity mapping were conducted. A next-generation sequencing-based multiplexing assay that encompasses the 120 known hearing loss genes was also used. For genes involved in Usher syndrome, we found a mutation in MYO7A (42 families), CDH23 (5 families), PCDH15 (4 families), USH1G (1 family), USH1C (1 family) and USH2A (2 families). The overall results of this study are highly suggestive that the underlying molecular basis of hearing loss in Saudi Arabia is very genetically heterogeneous. The benefit of this study will hopefully provide the foundation for knowledge and awareness through screening of carrier status and genetic counseling, thereby having a major impact upon early intervention for and prevention of Usher syndrome in our population.
 

Change L Tan

University of Missouri, USA

Title: Holistic studies of whole genomes

Time : 11:50-12:15

Speaker
Biography:

Change Tan received a BS in Chemistry at Hunan Normal University, an MS in organic chemistry at Nan Kai University, a PhD in biochemistry at University of Pennsylvania and a postdoc training in genetics at Harvard Medical School. She joined University of Missouri in 2005 and is currently an associate professor in the Division of Biological Sciences at University of Missouri. Her research interests include genetics, comparative genomics, developmental biology, molecular biology, origin of life, and origin of biodiversity. She teaches molecular biology and signal transduction to graduate and undergraduate students. 

Abstract:

Statement of the Problem: Two complementary goals of biological research are to understand how each organism works and how that relates to other organisms. Specifically, the function of all genes and non-genes (i.e., all the regions of a genome that do not code for any genes) of each organism and how its genes and non-genes compare with those of other organisms. The progress in DNA sequencing has generated large amounts of sequence data, and many computer programs have been developed to interpret these data, especially in identifying and analyzing the similarities among genes and genomes. Unfortunately, in the zeal of finding similarities, the differences among genes and genomes are often not just simply ignored, but intentionally masked, trimmed, or filtered. With the increase in the number of genes or organisms being compared, the deleted data increase exponentially. The tragic consequence is that the very data we need to answer a question such as “what makes a dog a dog, instead of a cat” are cut out, because much of our hard-generated data have been rendered invisible. Methodology & Theoretical Orientation: I propose to use a holistic approach to address the problem; using all the data, all the sequence of whole genes, all the genes of whole genomes. Instead of cherry-picking only those regions of genomes that are similar enough to be aligned, carefully inspect each section. Conclusion & Significance: Many a time, the very life of an organism hinges on a small part of its genome, even a single base pair as shown by the identification of many lethal point-mutations. Ignoring "irrelevant" data, however benign it may appear, can be devastating. It is foreseeable that a tremendous amount of knowledge can be gained by comparing and contrasting different life forms using both similar and different sequences of genes and genomes.
 

Sadia Ajaz

University of Karachi, Pakistan

Title: Germ-line mutanome profiling of the Breast cancers in Pakistani population

Time : 12:15-12:40

Speaker
Biography:

Sadia Ajaz is currently involved in molecular profiling of breast cancers in local population. The translational medicine approach integrates molecular epidemiology of breast cancers with molecular pathology and molecular cancer therapeutics. The research studies are designed according to epidemiological principles and investigate the applications of molecular discoveries in prevention and management of cancers in general and breast cancers in particular. She has eleven publications so far, including seven publications in the field of molecular oncology in peer-reviewed international journals. Her research experience includes molecular oncology projects at prestigious national and international institutions. Area(s) of Research: Biochemistry, Human Genetics and Molecular Medicine.
 

 

Abstract:

Statement of the Problem: Cancers are complex disorders. Consanguineous populations, by virtue of autozygosity, provide a unique model for the investigations of the underlying genetic component(s). A prototype example in the breast cancers is the identification of BRCA1/2 gene defects in Ashkenazi Jews. In Pakistan, the age-standardized rate (ASR) of the incidence of breast cancers in females is among the highest in Asia, whereas the mortality rate is one of the highest in the world. With the consanguinity rate of 56.4% and inbreeding coefficient (F) of 0.0331, it is extremely important to investigate the role of inherited mutations in breast cancers in Pakistani population.  Methodology and Theoretical Orientation: BROCA analysis for breast cancers consists of twenty-seven (27) established and candidate breast cancer genes involved in molecular carcinogenesis. A pilot hospital-based cohort study was designed. Eighty-five breast cancer patients and three controls with no medical history of any cancer participated in the study. The BROCA investigations were carried out by a genomic capture, massively parallel next-generation sequencing assay on Illumina HiSeq2000 assay with 100bp read lengths. Copy number variations were determined by partially-mapped read algorithm. Once the mutation was identified, it was validated by Sanger sequencing. After informed consent, the mutations were screened in the familial samples. Findings: The analysis revealed germ-line mutations in 12% of the patients. These mutations were restricted to three genes (BRCA 1, BRCA 2, and TP53). The identified mutations consist of both novel and previously reported alterations and result in protein truncation. No mutations were identified in the remaining twenty-four (24) genes. Mutation screening in the familial samples identified carriers in four out of five families. Conclusions and Significance: The study provides a framework for the development of preventive and treatment strategies against breast cancers in Pakistani population.
 

Reina Villareal

Bayer college of Medicine, USA

Title: Musculoskeletal response to hormonal therapies is influenced by CYP19A1

Time : 13:40-14:05

Speaker
Biography:

Villareal has established herself as a respected patient-oriented researcher studying the genetic determinants of estrogen metabolism and bone biology. She obtained RO3, R21, and VA Merit Award support for her research program. She left Washington University to become an Associate Professor of Medicine at the New Mexico VA Health Care System and the University of New Mexico School of Medicine. There, she served as the Chief of the Endocrinology Division. Recently, she joined the faculty at Baylor Medical College of Medicine as an Associate Professor of Medicine. She has a VA Merit Award to support work on the role of sex steroids to augment lifestyle in obese, elderly patients.
 

Abstract:

Polymorphisms of the CYP191A1 which encodes aromatase, the enzyme that converts testosterone to estradiol, are reported to influence the skeletal phenotypes in both men and postmenopausal women. We reported that the rs700518 polymorphism (G to A) of the CYP19A1 was associated with differences in bone loss and body composition changes among women with estrogen receptor positive breast cancer given aromatase inhibitors (AIs). Women with the AA genotype had significant bone loss in the spine and total hip compared to women with the G allele (GA+GG genotypes) after 1-year AI treatment. Meanwhile, women with the GG genotype had significant loss in fat-free mass (FFM) and gain in trunk fat mass (TFM) compared to women with the A allele (AA+GA) who had no loss in FFM but had significant loss in TFM. These findings suggest that women with the GA genotype have the best side effect profile to AIs. Using the same concept in hypogonadal men treated with testosterone for 18 months shows that although there were no inter-genotype differences in bone mineral density changes (hip and spine) for both rs700518 and rs1062033, the GG genotype (G to C) for rs1062033 experienced significant improvement in bone geometry parameters (total bone and cortical area) compared to GC+CC genotypes. Moreover, total fat and TFM decreased more in AA than GA+GG and in CC than GC+GG in rs700518 and rs1062033, respectively. Lean mass increased more in AA than GA+GG and in CC than GC+GG in rs700518 and rs1062033, respectively. We found no intergenotype differences in adverse effects on the hematocrit and the prostate. A difference in CYP19A1 expression in the fat was observed in rs1062033 variants. Rs700518 and rs1062033 are in partial linkage in our sample. Thus, we conclude that CYP19A1 polymorphisms influences response to hormonal therapies and should be considered in treatment decision-making.
 

Speaker
Biography:

Villareal has established herself as a respected patient-oriented researcher studying the genetic determinants of estrogen metabolism and bone biology. She obtained RO3, R21, and VA Merit Award support for her research program. She left Washington University to become an Associate Professor of Medicine at the New Mexico VA Health Care System and the University of New Mexico School of Medicine. There, she served as the Chief of the Endocrinology Division. Recently, she joined the faculty at Baylor Medical College of Medicine as an Associate Professor of Medicine. She has a VA Merit Award to support work on the role of sex steroids to augment lifestyle in obese, elderly patients.
 

Abstract:

Polymorphisms of the CYP191A1 which encodes aromatase, the enzyme that converts testosterone to estradiol, are reported to influence the skeletal phenotypes in both men and postmenopausal women. We reported that the rs700518 polymorphism (G to A) of the CYP19A1 was associated with differences in bone loss and body composition changes among women with estrogen receptor positive breast cancer given aromatase inhibitors (AIs). Women with the AA genotype had significant bone loss in the spine and total hip compared to women with the G allele (GA+GG genotypes) after 1-year AI treatment. Meanwhile, women with the GG genotype had significant loss in fat-free mass (FFM) and gain in trunk fat mass (TFM) compared to women with the A allele (AA+GA) who had no loss in FFM but had significant loss in TFM. These findings suggest that women with the GA genotype have the best side effect profile to AIs. Using the same concept in hypogonadal men treated with testosterone for 18 months shows that although there were no inter-genotype differences in bone mineral density changes (hip and spine) for both rs700518 and rs1062033, the GG genotype (G to C) for rs1062033 experienced significant improvement in bone geometry parameters (total bone and cortical area) compared to GC+CC genotypes. Moreover, total fat and TFM decreased more in AA than GA+GG and in CC than GC+GG in rs700518 and rs1062033, respectively. Lean mass increased more in AA than GA+GG and in CC than GC+GG in rs700518 and rs1062033, respectively. We found no intergenotype differences in adverse effects on the hematocrit and the prostate. A difference in CYP19A1 expression in the fat was observed in rs1062033 variants. Rs700518 and rs1062033 are in partial linkage in our sample. Thus, we conclude that CYP19A1 polymorphisms influences response to hormonal therapies and should be considered in treatment decision-making.

Speaker
Biography:

Diptee Kulkarni is an experienced pharmaceutical R&D professional with expertise in cancer genetics and genomics, cancer molecular biology, pharmacogenetics, and precision medicine. She’s a licensed physician with a PhD in cancer molecular pharmacology. She has extensive experience in understanding the genetic basis of cancer risk and outcomes as well as drug response genetics. Her current work focuses on using genetic information for effective drug discovery and development for which she utilizes data from publicly available genetic/genomic databases as well as genetic/healthcare data obtained from the real world setting such as biobanks.
 

Abstract:

Numerous genome-wide association studies (GWAS) have identified robust associations between germline singlenucleotide polymorphisms (SNPs), many in the non-coding genome, and cancer. There is evidence for the non-coding SNP associations to be enriched in regulatory regions of the genome such as enhancers and promoters – for example, the LMO1 super enhancer SNP in neuroblastoma (Oldridge et al., 2015) or GREM1 enhancer SNP in colorectal cancer (Lewis et al., 2014) among others. These SNPs were shown to regulate expression of LMO1 and GREM1, respectively, through differential transcription factor binding and in turn oncogenic dependency in tumor cells. To identify additional examples of regulatory SNPs as cancer drivers, we overlaid published genome-wide significant cancer associations with active chromatin marks from Encyclopedia of DNA Elements and searched for SNPs that resided within gene regulatory elements. To map these SNPs to candidate genes and determine direction of effect, we co-localized GWAS signals with expression quantitative trait (eQTL) signals from the Genotype-Tissue Expression (GTEx) Consortium database. Lastly, we looked for somatic gene amplification and/or overexpression of the mapped genes in the Cancer Genome Atlas (TCGA). With this approach, we identified a set of target genes that not only exhibit significant cancer association in GWAS, but also have evidence for epigenetic regulation and propensity for amplification and/or overexpression in tumors. We identified more than 25 novel cancer-target pairs with strong germline, regulatory and somatic gain of function evidence. A look up through synthetic lethality screen data available inhouse suggested that several of these targets are self-lethal, further underscoring their importance for cancer cell proliferation and survival.
 

Anna R Moore

Temple University Philadelphia, USA

Title: Molecular regulation of experience dependent plasticity

Time : 14:30-14:55

Speaker
Biography:

Anna Moore is a Assistant professor in the department of biology at Temple University, Philadelphia,USA. She has  a long standing interest in understanding how the brain develops and adapts to the world around it. She was trained as an electrophysiologist during her PhD where she explored the emergence of electrical activity in cortical neurons during development. For her postdoctoral work, she went on to expand her skill set to include molecular biology, mouse genetics, and calcium imaging to identify novel molecules important for synapse formation.
 

Abstract:

Sensory experience plays an important role in shaping neural circuitry through activity-dependent regulation of both synaptic connectivity and intrinsic properties of individual neurons. Identifying the molecular players responsible for converting external stimuli into altered neuronal output remains a crucial step in understanding experience-dependent plasticity and circuit function. Using the mouse visual system as a model, we investigated the role of the activity-regulated, non-canonical Ras-like GTPase Rem2 in ocular dominance plasticity. Our in vivo analysis reveals that a primary function of Rem2 signaling is to stabilize the intrinsic excitability of cortical neurons in order to maintain proper levels of network activity. Consistent with these findings, both in vitro and in vivo recordings reveal increased spontaneous firing rate in the absence of Rem2. In addition, our data establish a novel, cell-autonomous role for Rem2 in regulation intrinsic excitability of layer 2/3 pyramidal neurons, prior to changes in synaptic function. Taken together, we propose that Rem2 functions as a calcium-sensitive cytoplasmic signal transduction molecule and works to convey changes at the membrane into changes in gene expression in the nucleus to regulate intrinsic excitability. Our molecular studies promise to yield significant insight into the transcriptional program by which a neuron instructs its intrinsic properties.
 

Change L Tan

University of Missouri, USA

Title: Holistic studies of whole genomes
Speaker
Biography:

Change Tan received a BS in Chemistry at Hunan Normal University, an MS in organic chemistry at Nan Kai University, a PhD in biochemistry at University of Pennsylvania and a postdoc training in genetics at Harvard Medical School. She joined University of Missouri in 2005 and is currently an associate professor in the Division of Biological Sciences at University of Missouri. Her research interests include genetics, comparative genomics, developmental biology, molecular biology, origin of life, and origin of biodiversity. She teaches molecular biology and signal transduction to graduate and undergraduate students. 

Abstract:

Statement of the Problem: Two complementary goals of biological research are to understand how each organism works and how that relates to other organisms. Specifically, the function of all genes and non-genes (i.e., all the regions of a genome that do not code for any genes) of each organism and how its genes and non-genes compare with those of other organisms. The progress in DNA sequencing has generated large amounts of sequence data, and many computer programs have been developed to interpret these data, especially in identifying and analyzing the similarities among genes and genomes. Unfortunately, in the zeal of finding similarities, the differences among genes and genomes are often not just simply ignored, but intentionally masked, trimmed, or filtered. With the increase in the number of genes or organisms being compared, the deleted data increase exponentially. The tragic consequence is that the very data we need to answer a question such as “what makes a dog a dog, instead of a cat” are cut out, because much of our hard-generated data have been rendered invisible. Methodology & Theoretical Orientation: I propose to use a holistic approach to address the problem; using all the data, all the sequence of whole genes, all the genes of whole genomes. Instead of cherry-picking only those regions of genomes that are similar enough to be aligned, carefully inspect each section. Conclusion & Significance: Many a time, the very life of an organism hinges on a small part of its genome, even a single base pair as shown by the identification of many lethal point-mutations. Ignoring "irrelevant" data, however benign it may appear, can be devastating. It is foreseeable that a tremendous amount of knowledge can be gained by comparing and contrasting different life forms using both similar and different sequences of genes and genomes.
 

  • Poster presentations

Session Introduction

Adriana Pérez Portilla

National Centre for Biotechnology, Spain. Instituto de Investigación Sanitaria Puerta de Hierro Segovia de Arana, Spain

Title: Characterization of Genetic variation in the Fc gamma receptor locus in the Ecuadorian population
Biography:

Adriana Pérez Portilla studied Biochemistry and Pharmacy at the University of Cuenca (Ecuador). She has a Master´s degree in Biotechnology at the Technical University of Madrid (UPM), and she is in a PhD program in Molecular Biosciences at the Autonomous University of Madrid (UAM).
 

Abstract:

Human Fcγ receptors (FcγRs) are glycoproteins that bind the Fc region of IgG. These proteins are essentially receptors for immune complexes and are primarily, though not exclusively, expressed on cells of the innate immune system, thereby linking the humoral immune system with cellular effectors. Based on their structure and affinity for monomeric IgG three classes of FcγRs are distinguished, FcγRI (CD64), FcγRII (CD32) and FcγRIII (CD16). Low-affinity FcγRs (CD32 and CD16) are encoded in a single FCGR locus on chromosome 1, a region characterized by both genetic polymorphism and copy number variation (CNV). The combination of gene duplication, multiple common single nucleotide polymorphisms (SNPs) and CNVs is characteristic of regions involved in immune regulation and studies of this CNV and these SNPs in different human populations can provide insight into the evolution of this locus. We studied FCGR genetic variation in a cohort of 69 individuals of Ecuadorian origin, using both a multiplex ligation-dependent probe amplification (MLPA) method (MRC-Holland, Amsterdam, The Netherlands) and direct sequencing. In line with previously published data analyzing other South American populations, we observed a high frequency of individuals carrying 3 copies of FCGR3B (coding for a CD16B receptor) and the great majority of the currently studied donors were of the FCGR3B HNA1a allotype, which is found more frequently in South American populations than in Caucasoids. In contrast, the common FCGR2A R131H, FCGR3A V158F, FCGR2B I232T and FCGR2C Q57X polymorphisms were found in distributions similar to those observed in Caucasoids. We also identified 4 intronic SNPs in the FCGR3A gene, two of them not previously described, that might affect splicing. The implications of these data will be discussed.
 

Sharareh Kamfar

Hamadan University, Iran. National Institute for Genetic Engineering and Biotechnology, Iran and Baqiyatallah El - Azam Subspeciality Hospital, Iran

Title: Mitochondrial DNA copy number variation in Iranian patients with non-alcoholic fatty liver disease
Biography:

Sharareh Kamfar has graduated in molecular medicine in Hamadan University of Medical Sciences, Iran. Her thesis is about the relation between nonalcoholic fatty liver disease and mitochondria. In the future, she wants to follow this topic to get acceptable results but now she is working on Thiamine-responsive megaloblastic anemia syndrome seriously in a Pediatric Congenital Hematologic Disorders Research Center (PCHDRC). She has also researched into probiotics for many years in university.. 
sharareh

Abstract:

Introduction: Non-alcoholic fatty liver disease (NAFLD) is the term for a range of damages, from very mild hepatic steatosis to nonalcoholic steatohepatitis (NASH). Mitochondria are the main source of reactive oxygen species (ROS) in hepatocytes.  Recent evidence suggests that mitochondrial dysfunction leads to an overproduction of ROS which is considered to be an important factor associated with progression of NAFLD. The aim of this study is to assess an association between mtDNA copy number and risk of NAFLD in a sample of Iranian population. Methodology & Theoretical Orientation: This study included 43 patients with NAFLD and 43 healthy control subjects. The mtDNA copy number was measured by a quantitative real-time PCR assay using DNA extracted from peripheral blood samples. Findings: The relative expression of mtDNA copy number was 8.4 fold higher in patients with NAFLD than healthy controls (P<0.001). In addition, the mtDNA copy number was 8.7 (P<0.001) and 8.1-fold (P<0.001) higher in nonalcoholic fatty liver (NAFL) and non-alcoholic steatohepatitis (NASH) patients than healthy controls, respectively. Conclusion & Significance: This study showed an association between mtDNA copy number in Peripheral Blood and risk of NAFLD that may be a consequence of compensatory response to the exposures to oxidative damage induced by ROS. Therefore this results suggest that changes in mtDNA copy number may be useful as a blood-based biomarker for detection of NAFLD.
 

Biography:

Kambiz Hasrak has graduated from Hamadan University of Medical Sciences, Iran in the field of molecular medicine (PhD). His thesis was about Investigation of primary or secondary origin of mitochondrial DNA variations in Colon cancer patients. Now, he is working on cancers and genetic diseases and also Thiamine-responsive megaloblastic anemia syndrome in a Molecular Genetics Laboratory in Baqiyatallah El-Azam Hospital in Tehran.
 

Abstract:

Introduction: Non-alcoholic fatty liver disease (NAFLD), is the term for a range of conditions caused by excessive lipid accumulation in hepatocytes in the absence of excess alcohol intake or other pathological causes. NAFLD is now the most common liver disease in the world. Mitochondria are the main source of cellular reactive oxygen species (ROS) in cells and also play a key role in fatty acid ß-oxidation and oxidative phosphorylation and therefore mitochondrial dysfunction will lead to accumulation of free fatty acids. Generated mutations by ROS in the mitochondrial DNA D-loop region could disturb mitochondrial function, oxidative phosphorylation & ATP production. Therefore these data strongly suggest that NAFLD might be a mitochondrial disease. The aim of this study was to the analysis of mutations in the mitochondrial DNA D-loop region in NAFLD patients. Methodology & Theoretical Orientation: Genomic DNA was extracted from fresh liver tissue samples of NAFLD patients and control subjects by using a DNA isolation kit. Two pairs of primers designed for PCR amplification to amplify the mtDNA D-loop region and subsequently were sequenced using a sequence analyzer. The results of the sequencing were confirmed with a human mitochondrial database which mtDNA mutations have been reported in a spectrum of clinical disorders. Findings: After D-loop sequencing, 85 different variations including 3 deletions, 6 insertions and 76 single nucleotide polymorphisms (SNPs) were detected. A significant difference was seen between two groups in 6 variations (P<0.05; T334C, C16111T, A16220C, C16266T, c16221ins, A248del). A novel insertion (16221 ins C) was observed in patients. Conclusion & Significance: we think that the disease has damaged the mitochondrial DNA and these mutations have been created. Our findings indicate that D-loop alterations are frequent in NAFLD patients and may play a significant role in the progression of NAFLD.
 

Guangying Wang

Chinese Academy of Sciences, China Zhejiang Gongshang University, China

Title: Toxicogenomic investigation of Tetrahymena thermophila exposed to organic pollutants and arsenic
Biography:

Wang have been well trained in bioinformatics and population genetics. Wang research interests focus on some basic questions using Tetrahymena thermophila as a model system. Based on professional skills in Bioinformatics and omics data analysis, he have made a direct contribution to reveal some important biological process or pathway in Tetrahymena and other ciliated protozoa through genome or transcriptome sequencing. Wang early publications have revealed that germline-limited sequences in Tetrahymena can encode genes with specific expression patterns and development-related functions during Tetrahymena MAC development. Wang also helps to demonstrate a facultative pathogen ciliate, Pseudocohnilembus persalinus, may gain its virulence through horizontal gene transfer. In addition, by integrating different kinds of omics data,and he helps to construct functional genomics database of Tetrahymena.
 

Abstract:

The organic pollutants such as Benzopyrene (BaP), dichlorodiphenyltrichloroethane (DDT), tributyltin (TBT), and 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) are persistent in the environment and capable of endocrine disruption within the reproductive system, the central nervous system, or the immune system. Arsenic contamination is also a serious risk to human health and affects millions of people across the world. The ciliate protozoan Tetrahymena thermophila has long been used a good unicellular eukaryotic model for toxicological studies. In this study, this organism was exposed to BaP, DDT, TBT, TCDD, and Arsenic for 24 hrs, respectively and then RNA-Seq of each toxicant exposure was performed to identify differentially expressed genes (DEGs). The functions of these DEGs were categorized using Gene Ontology enrichment analysis and the results suggested that the responses of T. thermophila were similar to those of multicellular organisms. For each toxicant, the involved gene-interaction network was construct and the model of each toxicant effect on T. thermophila was inferred. In addition, based on analysis of the networks, key enzymes that are potentially responsive to the toxicant metabolism were also identified. Functional validation of these key enzymes is ongoing.

Gulmira Yermakhanova

Medical Center Hospital of President’s Affairs Administration, Republic of Kazakhstan

Title: Study of association of some gene polymorphisms with metabolic syndrome and its components in Kazakh population
Biography:

Gulmira Yermakhanova is from Kazakhstan that is developing and an independent country in Central Asia. Her undergraduate degree is Medical care and Master’s degree in Public Health, which was completed in Kazakhstan. Currently, she works as a head of the clinical trials sector at the Medical Center Hospital of President’s Affairs Administration of the Republic of Kazakhstan.  And, she is involved in the project “Study of the genetic risk characteristics of diseases associated with metabolic syndrome in Kazakh population”. Her research interests are metabolic syndrome, age-associated diseases, gerontology, and public health.
 

Abstract:

Purpose of the study: To assess the statistical association of gene polymorphisms with metabolic syndrome (MS) and its components in a sample of Kazakh population. The disturbance of glucose homeostasis in most cases precedes other signs of MS. We hypothesized that genetic risk assessment of beta-cell dysfunction and insulin resistance can indicate its presence before the development of leading signs of MS. Methods: Anthropometric and biochemical parameters were estimated for 1000 individuals of Kazakh population who had MS signs in accordance with the criteria of the IDF (2005), and compared with similar parameters of 1000 individuals of Kazakh population without MS. A purposeful search has been carried out for some variants of genes that demonstrated their connection with beta-cell dysfunction and insulin resistance in other populations: HNF1A gene and FTO gene. Identification of polymorphisms was carried out using the platform of the open array QuantStudio 12K Flex Real-Time PCR. The influence of polymorphisms on the occurrence of MS was assessed using logistic regression analyzes.  Results: After adjusting for BMI, sex, age, we found an increased risk of MS in the case of rs1169288, rs2464196 and rs735396 of the HNF1A gene (OR 2.08, 95% CI 1.38-3.14, p = 0.032; OR 2.19, 96% CI 1,66-4,20, p = 0,031; OR 1.51, 95% CI 1.03-2.14, p = 0.019 respectively). Also, rs2751812, rs8050136, rs9939609 (OR 1.58, 98% CI 1.22-3.39, p = 0.028; OR 1.52, 97% CI 1.35-3.31, p = 0.022; OR 1.51, 99% CI 0.81-2.34, p = 0.015, respectively) of the FTO gene demonstrate the objective risk of MS, which underlines the special role of obesity in this regard. Conclusions: The study establishes the relationship of rs1169288, 2464196 and 735396 of the HNF1A and rs2751812, rs8050136, rs9939609 of the FTO with the MS in Kazakh population.
 

Massimiliano Chetta

Laboratory of Human genetics, ospedale Antonio Cardarelli, Italy and Department of Medicine, Surgery and Dentistry, University of Salerno, Italy

Title: Spatial and temporal distribution of small no coding RNAs (miRNAs and piRNAs) into the cell
Biography:

Massimiliano Chetta is a biologist with a specialization in medical genetics and PhD. in molecular medicine of the adult and child. He has an extensive international experience in genetics and public healt. Currently he is a biologist manager at the Cardarelli Hospital in Naples, hospital of national importance where he carries out activities of molecular biology for the oncology departmentand and post-natal cytogenetic diagnosis. In recent years he has been dedicated to the analysis of big data (whole exome, target sequencing, small RNA-Seq)
 

Abstract:

The diffusion of new technologies of high throughput sequencing has resulted in a large amount of sequencing data set that gave us the opportunity to shine the spotlight on different aspects of the intricate cellular networks. The 90% of the genome is transcribed following distinct regulatory pathways, tissue-specific rhythms in specific time-points. The complex regulatory networks control is realized through different types of trans-regulators TFs (transcription factors), different classes of small noncoding RNAs and steps in their maturation. All these evidences have changed the view of cellular networks regulation. However, the advances in methods that analyze RNA populations allowed a quantitative, and rapid characterization of small RNAs in cells and/or tissues producing a picture under a precise condition. All these data are quickly stored in specialized databases that become a source of information, and by a simply changing of the initial question, it can provide surprising results. We performed an analysis of complete subset sequences of small non-coding RNA (miRNA and piRNA) stored in the main data base to identify occurrence of conserved motifs and possible interplay between transcription factors and small non-coding RNAs in genome-scale regulatory networks. In particular, we analyzed the entire subgroup of Homo sapiens mature miRNA (1881 mature miRNAs sequences from http://www.mirbase.org/ftp.shtml) and piRNA (32826 piRNAs sequences from http://regulatoryrna.org/database/piRNA/download.html).